Mr Gunner has admitted telling the Yuendumu community "consequences will flow" three days after Constable Zachary Rolfe, 30, shot 19-year-old Kumanjayi Walker during a failed outback arrest in 2019.
But he says it was a reference to an upcoming coronial inquest into Mr Walker's death and the fact there will be outcomes, findings and recommendations that flow from it.
"The transcript of my address to mourners in Yuendumu on November 12 shows very clearly that I referred specifically and only to the inquest," he said on Monday.
It comes after Const Rolfe was on Friday acquitted of intentionally killing the teen following an at times heated and emotional five week trial that divided many Territorians.
Immediately after the verdict, defence lawyer David Edwardson QC took to the steps of the Supreme Court in Darwin where he triumphantly repeated Mr Gunner's "consequences will flow" line as he criticised unnamed public figures and lambasted the police investigation into his client.
NT Opposition Leader Lia Finocchiaro was also critical of Mr Gunner in the wake of the trial, saying the chief minister had "serious questions to answer over the appearance of political interference" when he visited the remote community, 290km northwest of Alice Springs, a day before Const Rolfe was charged with murder.
"The extraordinary circumstances surrounding the decision to charge and bring Const Rolfe to trial requires nothing less than a full, independent, inquiry," the Country Liberal Party leader said late on Friday.
The claim was backed by NT Police Association president Paul McCue, who described Mr Gunner's comment as irresponsible and clumsy.
"Political interference was alive," he said at post-trial press conference on Monday.
Mr Gunner has since sought to douse the criticism by releasing a transcript of his statement to the Yuendumu community in 2019.
It read: "I know the coroner will listen to you. The coroner will seek to answer those questions you have, those questions I have. What happened that night and why, so justice can be done. I can promise you that investigation will be independent and consequences will flow as a result".
Mr Gunner also said on Monday that his statement had been deliberately and irresponsibly misrepresented despite constant clarification.
"This has inflamed an already tragic situation," he said.
A date for Mr Walker's inquest has not been announced.
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